rs31482090 SNP Detail

Summary

• ID
  rs31482090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87753416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG AAGACCCTGC CTGTCCAGTA
  Y
  ACCCTGCCTC TGGTACCTAC CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45539308	mCV23485248	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss51575834	NES14668897	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	C		T	T	C	C	T	C	C	T	T
ss135468465	ENSMUSSNP3346366	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31482090					SNP	T	T	C	T	T	C	C	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575834	NES14668897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87753416 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	764 bp upstream
Rr579558	regulatory region 579558	1943 bp distal
Rr579559	regulatory region 579559	156 bp proximal
Sh2d2a	SH2 domain containing 2A	646 bp upstream
Tssr29832	transcription start site region 29832	810 bp downstream
Tssr29833	transcription start site region 29833	616 bp upstream
Tssr29834	transcription start site region 29834	669 bp upstream
Tssr29835	transcription start site region 29835	731 bp upstream
Tssr29836	transcription start site region 29836	772 bp upstream
Tssr29837	transcription start site region 29837	879 bp upstream
Tssr29838	transcription start site region 29838	895 bp upstream
Tssr29839	transcription start site region 29839	1027 bp upstream
Tssr33958	transcription start site region 33958	480 bp downstream
Tssr33959	transcription start site region 33959	678 bp downstream
Tssr33960	transcription start site region 33960	775 bp downstream