rs3148213 SNP Detail

Summary

• ID
  rs3148213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:38714826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA GAAAGTACTT TTTAAAAAGG
  R
  CGGGGATGGT TTCCCTTTGT GGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45348926	mCV25063561	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146421314	ENSMUSSNP1936259	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320227490	CHEV_2_38680334	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3148213					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:38714826 () rs orientation: forward

Symbol	Name	Function Class
Nr6a1	nuclear receptor subfamily 6, group A, member 1	within coordinates
Nr6a1os	nuclear receptor subfamily 6, group A, member 1, opposite strand	within coordinates
Rr825	regulatory region 825	110 bp distal
Rr43339	regulatory region 43339	1975 bp proximal
Rr56788	regulatory region 56788	within coordinates
Rr367190	regulatory region 367190	369 bp downstream
Tssr17564	transcription start site region 17564	1542 bp downstream
Tssr17565	transcription start site region 17565	1464 bp downstream