rs3148241 SNP Detail

Summary

• ID
  rs3148241
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102827344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT GGTTGTTTTT GTTGTTGTTG
  K
  TGTTGGTGGT GGTGGTGGTG GTGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45342765	mCV23736209	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss147128931	ENSMUSSNP2139418	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320441441	CHEV_2_102837156	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3148241					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102827344 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	1585 bp upstream
Rr561777	regulatory region 561777	967 bp proximal
Rr561778	regulatory region 561778	1308 bp proximal
Rr561779	regulatory region 561779	1596 bp proximal
Rr561780	regulatory region 561780	1942 bp proximal
Tssr19143	transcription start site region 19143	1578 bp upstream
Tssr19144	transcription start site region 19144	1594 bp upstream