rs31482598 SNP Detail

Summary

• ID
  rs31482598
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG GAAAAGTAGC CCAACTGACC
  S
  ACATGAAGTG GTACATGCCT TTCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46037151	mCV25053637	ABI	CRAMUS_MOUSE	f	SNP		G						C
ss48163964	NES11834484	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	G		G	G	G	G		G	G	G	G		G
ss322117525	CHEV_7_20280880	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31482598					SNP	G	G	C	G	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163964	NES11834484	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429456 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	578 bp downstream
Cpgi18507	CpG island 18507	990 bp proximal
Gm71725	predicted gene, 71725	1587 bp upstream
Rr155346	regulatory region 155346	545 bp proximal
Rr167193	regulatory region 167193	1855 bp distal
Rr167194	regulatory region 167194	944 bp proximal
Tssr2112	transcription start site region 2112	920 bp upstream
Tssr2113	transcription start site region 2113	945 bp upstream
Tssr2114	transcription start site region 2114	1060 bp upstream
Tssr2115	transcription start site region 2115	1096 bp upstream
Tssr2116	transcription start site region 2116	1171 bp upstream
Tssr2117	transcription start site region 2117	1193 bp upstream
Tssr2118	transcription start site region 2118	1300 bp upstream
Tssr2119	transcription start site region 2119	1309 bp downstream
Tssr2120	transcription start site region 2120	1372 bp upstream
Tssr2121	transcription start site region 2121	1404 bp upstream
Tssr64880	transcription start site region 64880	737 bp upstream
Tssr64881	transcription start site region 64881	789 bp upstream
Tssr64882	transcription start site region 64882	833 bp upstream
Tssr64883	transcription start site region 64883	871 bp upstream
Tssr64884	transcription start site region 64884	898 bp upstream
Tssr64885	transcription start site region 64885	977 bp upstream
Tssr64886	transcription start site region 64886	998 bp upstream
Tssr64887	transcription start site region 64887	1030 bp upstream
Tssr64888	transcription start site region 64888	1249 bp upstream
Tssr64889	transcription start site region 64889	1343 bp upstream
Tssr64890	transcription start site region 64890	1389 bp upstream
Tssr64891	transcription start site region 64891	1412 bp upstream
Tssr64892	transcription start site region 64892	1445 bp upstream
Tssr64893	transcription start site region 64893	1480 bp upstream
Tssr64894	transcription start site region 64894	1934 bp upstream
Tssr70973	transcription start site region 70973	761 bp downstream
Tssr70974	transcription start site region 70974	807 bp downstream
Tssr70975	transcription start site region 70975	835 bp downstream
Tssr70976	transcription start site region 70976	870 bp downstream
Tssr70977	transcription start site region 70977	918 bp downstream
Tssr70978	transcription start site region 70978	933 bp downstream
Tssr70979	transcription start site region 70979	957 bp downstream
Tssr70980	transcription start site region 70980	967 bp downstream
Tssr70981	transcription start site region 70981	988 bp downstream
Tssr70982	transcription start site region 70982	1002 bp downstream
Tssr70983	transcription start site region 70983	1035 bp downstream
Tssr70984	transcription start site region 70984	1052 bp downstream
Tssr70985	transcription start site region 70985	1117 bp downstream
Tssr70986	transcription start site region 70986	1150 bp downstream
Tssr70987	transcription start site region 70987	1180 bp downstream
Tssr70988	transcription start site region 70988	1224 bp downstream
Tssr70989	transcription start site region 70989	1263 bp downstream
Tssr70990	transcription start site region 70990	1275 bp downstream
Tssr70991	transcription start site region 70991	1320 bp downstream
Tssr70992	transcription start site region 70992	1328 bp downstream
Tssr70993	transcription start site region 70993	1337 bp downstream
Tssr70994	transcription start site region 70994	1378 bp downstream
Tssr70995	transcription start site region 70995	1383 bp downstream
Tssr70996	transcription start site region 70996	1416 bp downstream
Tssr70997	transcription start site region 70997	1450 bp downstream
Tssr70998	transcription start site region 70998	1512 bp downstream
Tssr70999	transcription start site region 70999	1530 bp downstream
Tssr71000	transcription start site region 71000	1973 bp downstream