rs31482827 SNP Detail

Summary

• ID
  rs31482827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161324144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGTGAGG AGTGGCCGAG GGAAATGCCT
  TTCCGAGTGA CATCTCTTCC CACAATCAAA CCTTGGTAAT TCATGATTGC TGAAACTTTG
  ATTCCAGGTT GGCCTCTCAA AAGAACACAT CCCTTTCAAT GAAGGGTTCC TCTTCTAAAC
  R
  TAAAAGTTAT CCCAAATTTA AGGAAGTAAA AAGTTTTGGA GTCTCTTTTC CTGTCAGGAT
  GCTTGGCAGC GTAGTTACTA TGGAAACGAC ACTGGCTTTC AGGGTTAGCT TCAGTATTAC
  ACTTCCCTTA TTGGCTACAA ATAAATGTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45038232	mCV23101333	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145915267	ENSMUSSNP5706298	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320080922	CHEV_1_163426706	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31482827					SNP	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161324144 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	within coordinates
Tssr9690	transcription start site region 9690	1919 bp downstream