rs31483880 SNP Detail

Summary

• ID
  rs31483880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128413555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGCAA GCAGGCAAGC
  CAGCAAACAA GAAAGCAAGA GAAGGCCAGG TGTGGTGGCA CACACCTTTA ATCTCAGCAC
  TCAGGAGGTA GAAGCAGGAA GAACTCCTTG AGTCCTGTCT GGTATACATA TCAAGCTATC
  AAGCTCTAGG TTAGGACCAC ATGATCCTGT CTGTCTGTCT GTCTCTGTCT CTCTGTTGCT
  S
  TCTCAAAGGC ACATGCACAC GTAAAAGACA TAGGCAAGCC AGATATGGTG GCTCATAGCT
  GTAATCCCAG CATTTAAAAG GTTAAGGAAA AGGATTACAA GGCGAGTAGG CTGGAGGGAG
  GGGTAGGAGA AGGAGGGGAG GGAAATAAAG AGGGAGAGGG AGGGAAAGGG AGAAAGAAAG
  GGCTGGAGAG GCAGCTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47056993	NES11273626	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C		G	G		G
ss323534705	CHEV_10_128014742	CHEVERUD	SCREENING_POP	f	SNP											G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31483880					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47056993	NES11273626	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128413555 () rs orientation: forward

Symbol	Name	Function Class
Erbb3	erb-b2 receptor tyrosine kinase 3	within coordinates
Rr441272	regulatory region 441272	1417 bp proximal
Tssr99899	transcription start site region 99899	783 bp downstream