rs31485493 SNP Detail

Summary

• ID
  rs31485493
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67549741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTTCT AGAGGTATAT
  GAGGTAAGAA AAATCAATAT TCCAATTAGA ACACCCGAAA TAATTAGCTC TAGTAACAAA
  TGTCTCTTAT AATTAAAAAT ATTGAATGTT TAAAAAACTC TTATAACATT TTAAGTTCCT
  AAAAGAAATG GCCTAACACT TAAAAAACAA CTTACTCTTC TATATAAATT GTTCACAAAA
  W
  TTTTTTTGCT ATTCTATATT ATACTATGCA TTTTAGCTTT ATTAACATAT CCCTAGTGTG
  TATGAATTCT ACACAGTACA ATCAAATAGA AATTATTTCG AGAAGCCACA AGACTCCAAC
  AATAAAAAAT ATTAGGATCA ATGGATTTGT CACAGTTTCT CCACAAGTAT TCATCATAGA
  AAATAGAGTA AAGGCAACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
ss46572713	NES10445813	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	WSB/EiJ
rs31485493					SNP	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572713	NES10445813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67549741 () rs orientation: forward

Symbol	Name	Function Class
Bend4	BEN domain containing 4	within coordinates
D5Ncnp4	DNA segment, Chr 5, National Center of Neurology and Psychiatry 4	1434 bp proximal
Rr612661	regulatory region 612661	1543 bp proximal
Tssr51234	transcription start site region 51234	1957 bp downstream