rs31485516 SNP Detail

Summary

• ID
  rs31485516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGGTTT GTGCCACTTT
  CTCCACTCCT ACGCTTCTGT CTTCCCATGC CTGGGGCAGC TCTACTTCTA TCTTTCTTTT
  CTAATTAGTC AAAGCCTCTC CCATCATCCC TTCCCAGGAA AGCCAAGGTA GGGGTCAGGG
  TGCTGATTGG AACCACCCAG CGACTGGTCA GCAATTGGCC GGCCCTCCAA TCTCCAAATC
  R
  TCACTTTGGA CGCGCCTGCC CAAGTCAATG ATTCCACATT CAGGAGAACC CAGAGAGGCA
  AGGCCAGAGT TCCACAATTC ACACACAACC CTAGACCTAG GTGCATTTCC TTCTCCACAT
  GGCTTCACAT TGCTTGACCC TGCCTGAGAT AATTGCCCAC CTCTCCTCCG AGTTCCTCAG
  CTCCGCCTCG GACTTGTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47057668	NES11267183	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G		G	A	A
ss323535805	CHEV_10_128181465	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31485516					SNP	A	A	A	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057668	NES11267183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	186 bp distal
Dgka	diacylglycerol kinase, alpha	within coordinates
Gm31504	predicted gene, 31504	538 bp upstream
Gm66065	predicted gene, 66065	1560 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	854 bp downstream
Rr402364	regulatory region 402364	240 bp upstream
Tssr96440	transcription start site region 96440	384 bp upstream
Tssr96441	transcription start site region 96441	528 bp upstream
Tssr96442	transcription start site region 96442	784 bp upstream
Tssr99940	transcription start site region 99940	1690 bp upstream
Tssr99941	transcription start site region 99941	564 bp upstream
Tssr99942	transcription start site region 99942	499 bp upstream
Tssr99943	transcription start site region 99943	437 bp upstream
Tssr99944	transcription start site region 99944	414 bp upstream
Tssr99945	transcription start site region 99945	324 bp upstream
Tssr99946	transcription start site region 99946	300 bp upstream
Tssr99947	transcription start site region 99947	157 bp upstream
Tssr99948	transcription start site region 99948	127 bp upstream
Tssr99949	transcription start site region 99949	437 bp downstream
Tssr99950	transcription start site region 99950	637 bp downstream
Tssr99951	transcription start site region 99951	660 bp downstream
Tssr99952	transcription start site region 99952	673 bp downstream
Tssr99953	transcription start site region 99953	678 bp downstream
Tssr99954	transcription start site region 99954	1036 bp downstream
Tssr99955	transcription start site region 99955	1069 bp downstream
Tssr99956	transcription start site region 99956	1824 bp downstream
Tssr99957	transcription start site region 99957	1891 bp downstream