rs31485518 SNP Detail

Summary

• ID
  rs31485518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATTGGCCG GCCCTCCAAT CTCCAAATCA TCACTTTGGA
  CGCGCCTGCC CAAGTCAATG ATTCCACATT CAGGAGAACC CAGAGAGGCA AGGCCAGAGT
  Y
  CCACAATTCA CACACAACCC TAGACCTAGG TGCATTTCCT TCTCCACATG GCTTCACATT
  GCTTGACCCT GCCTGAGATA ATTGCCCACC TCTCCTCCGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47057671	NES11267184	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31485518					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057671	NES11267184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	257 bp distal
Dgka	diacylglycerol kinase, alpha	within coordinates
Gm31504	predicted gene, 31504	467 bp upstream
Gm66065	predicted gene, 66065	1489 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	925 bp downstream
Rr402364	regulatory region 402364	169 bp upstream
Tssr96440	transcription start site region 96440	313 bp upstream
Tssr96441	transcription start site region 96441	457 bp upstream
Tssr96442	transcription start site region 96442	713 bp upstream
Tssr96443	transcription start site region 96443	1977 bp upstream
Tssr99940	transcription start site region 99940	1761 bp upstream
Tssr99941	transcription start site region 99941	635 bp upstream
Tssr99942	transcription start site region 99942	570 bp upstream
Tssr99943	transcription start site region 99943	508 bp upstream
Tssr99944	transcription start site region 99944	485 bp upstream
Tssr99945	transcription start site region 99945	395 bp upstream
Tssr99946	transcription start site region 99946	371 bp upstream
Tssr99947	transcription start site region 99947	228 bp upstream
Tssr99948	transcription start site region 99948	198 bp upstream
Tssr99949	transcription start site region 99949	366 bp downstream
Tssr99950	transcription start site region 99950	566 bp downstream
Tssr99951	transcription start site region 99951	589 bp downstream
Tssr99952	transcription start site region 99952	602 bp downstream
Tssr99953	transcription start site region 99953	607 bp downstream
Tssr99954	transcription start site region 99954	965 bp downstream
Tssr99955	transcription start site region 99955	998 bp downstream
Tssr99956	transcription start site region 99956	1753 bp downstream
Tssr99957	transcription start site region 99957	1820 bp downstream