rs31485521 SNP Detail

Summary

• ID
  rs31485521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCAGCA TGGTTGGTGT
  GAGGCTGAAC GGAAAGGAGA CCAATGAGTG GGGATTTACT GGTAGGGACT GGGGACCCAG
  GCATCCTGCA TCCCCCGCCC CGCCCCAAAC CCACGACTAA CTCCCTCCTA CCCTTCTCTG
  AAGTAGGAGC AGCACAACAA AGCCTTGTGT TCTTGGAATT GTATCCTCTT ACAGCTGGGA
  R
  TAGAAAGGAG TGGGAGAGCA GACTGCTTGT TGGAAATGTG TGTATATATT CGGGTCCAGT
  GAGGGTCAGA GAGAGAGAGA GAAGAAAAAA AAAGAAGAGA AAGGAAAAGA AAAGAAAAAA
  AAAAAACCGA AAGAAACAAA AGGCCCTCTA GTGGAAACAG AAGTAAGTAG TCTTCAAGTA
  TTTGGAGACA AAGCTGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47057674	NES11267185	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31485521					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057674	NES11267185	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	810 bp distal
Dgka	diacylglycerol kinase, alpha	178 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	936 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1478 bp downstream
Rr402364	regulatory region 402364	84 bp downstream
Tssr96440	transcription start site region 96440	211 bp downstream
Tssr96441	transcription start site region 96441	10 bp downstream
Tssr96442	transcription start site region 96442	160 bp upstream
Tssr96443	transcription start site region 96443	1424 bp upstream
Tssr99941	transcription start site region 99941	1188 bp upstream
Tssr99942	transcription start site region 99942	1123 bp upstream
Tssr99943	transcription start site region 99943	1061 bp upstream
Tssr99944	transcription start site region 99944	1038 bp upstream
Tssr99945	transcription start site region 99945	948 bp upstream
Tssr99946	transcription start site region 99946	924 bp upstream
Tssr99947	transcription start site region 99947	781 bp upstream
Tssr99948	transcription start site region 99948	751 bp upstream
Tssr99949	transcription start site region 99949	146 bp upstream
Tssr99950	transcription start site region 99950	13 bp downstream
Tssr99951	transcription start site region 99951	36 bp downstream
Tssr99952	transcription start site region 99952	49 bp downstream
Tssr99953	transcription start site region 99953	54 bp downstream
Tssr99954	transcription start site region 99954	412 bp downstream
Tssr99955	transcription start site region 99955	445 bp downstream
Tssr99956	transcription start site region 99956	1200 bp downstream
Tssr99957	transcription start site region 99957	1267 bp downstream