rs31485617 SNP Detail

Summary

• ID
  rs31485617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115641932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGAAA AATAATAATC
  GGGTCCTCAG GCTTTACATT ACTGATCTAC TGTAGTATTG ACTTAAATGA TATAAATTTT
  ATATACATCT GGACTTGAGG TAATTATTAT GTAATGATGC TAGTATTCTA CTACTTTGGA
  GTAATTTATA GGACGTGTGA CAGAACAGAA AATACAGACT ATAGCTGACA CGTCATTAGC
  R
  ATCTGTAGTT CTCTTAGCAG TCATCCTCCC AAGCTTTCCA ATTTGGCCCT TCCTTCTTCT
  TAGCCATTAA ATGAAAGAAG ATACATTAAA ATTATGAACT TCTATTTATG CAGCTAACAA
  TCTGCAAATA TATTGTAGAG ATTAAAATGT CTATTAAGTC ATTGTGTACA TGCATACATG
  AAAACTTTGT GTTATCATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057337	NES11882078	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31485617					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057337	NES11882078	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115641932 () rs orientation: forward

Symbol	Name	Function Class
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr637013	regulatory region 637013	898 bp distal
Rr637014	regulatory region 637014	1413 bp proximal
Tssr58319	transcription start site region 58319	1981 bp upstream