rs31485619 SNP Detail

Summary

• ID
  rs31485619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115642171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTGGCC CTTCCTTCTT
  CTTAGCCATT AAATGAAAGA AGATACATTA AAATTATGAA CTTCTATTTA TGCAGCTAAC
  AATCTGCAAA TATATTGTAG AGATTAAAAT GTCTATTAAG TCATTGTGTA CATGCATACA
  TGAAAACTTT GTGTTATCAT TCTTTTTTAT CTTTATTACA GAAAAAATTT CCTCATAGGT
  R
  GTAATAAATG TAGGTTGGGT AAAATAAATC CCCATGTAAT CACAAGACTG CTCAACTACA
  AACCATGACT AGTTCTAAAG ATTAGTCAAG ACAAAGAAAT TCCTACTTGT TGGAAAAACT
  GGGCACCGTC CTAAAGTTAC AATTGTGCTA CAATGTTACA TGCTGTGGCC AGTTTCTAGT
  TGACTTGAAA GCAGAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057339	NES11882080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31485619					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057339	NES11882080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115642171 () rs orientation: forward

Symbol	Name	Function Class
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr637013	regulatory region 637013	1137 bp distal
Rr637014	regulatory region 637014	1174 bp proximal
Tssr58319	transcription start site region 58319	1742 bp upstream