rs31485833 SNP Detail

Summary

• ID
  rs31485833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130287086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC AAAGAGCTCT TGTGTGAAGT
  W
  GTAGCATCTA TAAATTCACT AAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45538970	mCV23631845	ABI	CRAMUS_MOUSE	f	SNP	T					T		A
ss51628868	NES14661417	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A		T		A		T
ss135895084	ENSMUSSNP2344728	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							A
ss320965203	CHEV_3_130196355	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31485833					SNP	T	T	T	T	T	T	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51628868	NES14661417	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130287086 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585170	regulatory region 585170	1325 bp proximal
Rr585171	regulatory region 585171	1475 bp proximal
Rr585172	regulatory region 585172	1679 bp proximal