rs31486594 SNP Detail

Summary

• ID
  rs31486594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTGGAA TTGTATCCTC
  TTACAGCTGG GAATAGAAAG GAGTGGGAGA GCAGACTGCT TGTTGGAAAT GTGTGTATAT
  ATTCGGGTCC AGTGAGGGTC AGAGAGAGAG AGAGAAGAAA AAAAAAGAAG AGAAAGGAAA
  AGAAAAGAAA AAAAAAAAAC CGAAAGAAAC AAAAGGCCCT CTAGTGGAAA CAGAAGTAAG
  Y
  AGTCTTCAAG TATTTGGAGA CAAAGCTGTT GAAGCAACTC TCTAGAGTAG TGGGGTTTGC
  TGCTGCTGTT GTTATTTAAA CTTTAGATTC AGATCGGGAG TCGGAGAGTG ACCTGTCTCT
  GTTCTGCTGT CCTTTTCAGG TTTGTTCTGG TTTGCTTGCA TCCTGACCCT TCACTGCTTT
  GTTTTTGTTT TCATTTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057677	NES11267186	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C		C	T	T	C		C
ss323535809	CHEV_10_128182257	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31486594					SNP	T	T	C	T	T	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057677	NES11267186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	978 bp distal
Dgka	diacylglycerol kinase, alpha	346 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	768 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1646 bp downstream
Rr402364	regulatory region 402364	252 bp downstream
Tssr96440	transcription start site region 96440	379 bp downstream
Tssr96441	transcription start site region 96441	178 bp downstream
Tssr96442	transcription start site region 96442	within coordinates
Tssr96443	transcription start site region 96443	1256 bp upstream
Tssr99941	transcription start site region 99941	1356 bp upstream
Tssr99942	transcription start site region 99942	1291 bp upstream
Tssr99943	transcription start site region 99943	1229 bp upstream
Tssr99944	transcription start site region 99944	1206 bp upstream
Tssr99945	transcription start site region 99945	1116 bp upstream
Tssr99946	transcription start site region 99946	1092 bp upstream
Tssr99947	transcription start site region 99947	949 bp upstream
Tssr99948	transcription start site region 99948	919 bp upstream
Tssr99949	transcription start site region 99949	314 bp upstream
Tssr99950	transcription start site region 99950	143 bp upstream
Tssr99951	transcription start site region 99951	120 bp upstream
Tssr99952	transcription start site region 99952	116 bp upstream
Tssr99953	transcription start site region 99953	79 bp upstream
Tssr99954	transcription start site region 99954	244 bp downstream
Tssr99955	transcription start site region 99955	277 bp downstream
Tssr99956	transcription start site region 99956	1032 bp downstream
Tssr99957	transcription start site region 99957	1099 bp downstream