rs31486597 SNP Detail

Summary

• ID
  rs31486597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGAGAG AGAGAGAGAA
  GAAAAAAAAA GAAGAGAAAG GAAAAGAAAA GAAAAAAAAA AAACCGAAAG AAACAAAAGG
  CCCTCTAGTG GAAACAGAAG TAAGTAGTCT TCAAGTATTT GGAGACAAAG CTGTTGAAGC
  AACTCTCTAG AGTAGTGGGG TTTGCTGCTG CTGTTGTTAT TTAAACTTTA GATTCAGATC
  K
  GGAGTCGGAG AGTGACCTGT CTCTGTTCTG CTGTCCTTTT CAGGTTTGTT CTGGTTTGCT
  TGCATCCTGA CCCTTCACTG CTTTGTTTTT GTTTTCATTT TTCCTCTTCC TCCTCCATCA
  CTGTCACCAC CATGCTGCAG ATGAGCTTCA GTGCCTGGAA CGTGCTTCTC CGGTGCTGCA
  CCACGGATCT ATACCGCTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47057680	NES11267187	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31486597					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057680	NES11267187	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1074 bp distal
Dgka	diacylglycerol kinase, alpha	442 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	672 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1742 bp downstream
Rr402364	regulatory region 402364	348 bp downstream
Tssr96440	transcription start site region 96440	475 bp downstream
Tssr96441	transcription start site region 96441	274 bp downstream
Tssr96442	transcription start site region 96442	63 bp downstream
Tssr96443	transcription start site region 96443	1160 bp upstream
Tssr99941	transcription start site region 99941	1452 bp upstream
Tssr99942	transcription start site region 99942	1387 bp upstream
Tssr99943	transcription start site region 99943	1325 bp upstream
Tssr99944	transcription start site region 99944	1302 bp upstream
Tssr99945	transcription start site region 99945	1212 bp upstream
Tssr99946	transcription start site region 99946	1188 bp upstream
Tssr99947	transcription start site region 99947	1045 bp upstream
Tssr99948	transcription start site region 99948	1015 bp upstream
Tssr99949	transcription start site region 99949	410 bp upstream
Tssr99950	transcription start site region 99950	239 bp upstream
Tssr99951	transcription start site region 99951	216 bp upstream
Tssr99952	transcription start site region 99952	212 bp upstream
Tssr99953	transcription start site region 99953	175 bp upstream
Tssr99954	transcription start site region 99954	148 bp downstream
Tssr99955	transcription start site region 99955	181 bp downstream
Tssr99956	transcription start site region 99956	936 bp downstream
Tssr99957	transcription start site region 99957	1003 bp downstream