rs31486600 SNP Detail

Summary

• ID
  rs31486600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAAAGG AAAAGAAAAG
  AAAAAAAAAA AACCGAAAGA AACAAAAGGC CCTCTAGTGG AAACAGAAGT AAGTAGTCTT
  CAAGTATTTG GAGACAAAGC TGTTGAAGCA ACTCTCTAGA GTAGTGGGGT TTGCTGCTGC
  TGTTGTTATT TAAACTTTAG ATTCAGATCG GGAGTCGGAG AGTGACCTGT CTCTGTTCTG
  Y
  TGTCCTTTTC AGGTTTGTTC TGGTTTGCTT GCATCCTGAC CCTTCACTGC TTTGTTTTTG
  TTTTCATTTT TCCTCTTCCT CCTCCATCAC TGTCACCACC ATGCTGCAGA TGAGCTTCAG
  TGCCTGGAAC GTGCTTCTCC GGTGCTGCAC CACGGATCTA TACCGCTACC CCACACCCTT
  CTTCTTAACA GTATATGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47057683	NES11267189	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		T	C	C		T
ss323535810	CHEV_10_128182384	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31486600					SNP	C	C	C	C	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057683	NES11267189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1105 bp distal
Dgka	diacylglycerol kinase, alpha	473 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	641 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1773 bp downstream
Rr385481	regulatory region 385481	1997 bp upstream
Rr402364	regulatory region 402364	379 bp downstream
Tssr96440	transcription start site region 96440	506 bp downstream
Tssr96441	transcription start site region 96441	305 bp downstream
Tssr96442	transcription start site region 96442	94 bp downstream
Tssr96443	transcription start site region 96443	1129 bp upstream
Tssr99941	transcription start site region 99941	1483 bp upstream
Tssr99942	transcription start site region 99942	1418 bp upstream
Tssr99943	transcription start site region 99943	1356 bp upstream
Tssr99944	transcription start site region 99944	1333 bp upstream
Tssr99945	transcription start site region 99945	1243 bp upstream
Tssr99946	transcription start site region 99946	1219 bp upstream
Tssr99947	transcription start site region 99947	1076 bp upstream
Tssr99948	transcription start site region 99948	1046 bp upstream
Tssr99949	transcription start site region 99949	441 bp upstream
Tssr99950	transcription start site region 99950	270 bp upstream
Tssr99951	transcription start site region 99951	247 bp upstream
Tssr99952	transcription start site region 99952	243 bp upstream
Tssr99953	transcription start site region 99953	206 bp upstream
Tssr99954	transcription start site region 99954	117 bp downstream
Tssr99955	transcription start site region 99955	150 bp downstream
Tssr99956	transcription start site region 99956	905 bp downstream
Tssr99957	transcription start site region 99957	972 bp downstream