rs31486602 SNP Detail

Summary

• ID
  rs31486602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGTTCT GGTTTGCTTG
  CATCCTGACC CTTCACTGCT TTGTTTTTGT TTTCATTTTT CCTCTTCCTC CTCCATCACT
  GTCACCACCA TGCTGCAGAT GAGCTTCAGT GCCTGGAACG TGCTTCTCCG GTGCTGCACC
  ACGGATCTAT ACCGCTACCC CACACCCTTC TTCTTAACAG TATATGCGTC ACCGTTAGCA
  R
  AGTCTATCTC CCCTTCCTAC ATCGCCTCCT TACTCACAGT CCAACAAACG ATTTTTTTCC
  TGAGACAAGA TTTTAGTATG TACATAGCCT AGGCTGGCAG TGAAATTGCC ATCCTGGTTC
  AACCTCTCAA GAGCTGGGTT TACCGGGTTT ATTGGTGTGT GCCACTCCTG CTATCAACAG
  ACACTTTTGA AGGTCTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47057686	NES11267190	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		G	A	A	G
ss323535811	CHEV_10_128182596	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31486602					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057686	NES11267190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1317 bp distal
Dgka	diacylglycerol kinase, alpha	685 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	429 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1791 bp proximal
Rr385480	regulatory region 385480	1985 bp downstream
Rr385481	regulatory region 385481	1785 bp upstream
Rr402364	regulatory region 402364	591 bp downstream
Tssr96440	transcription start site region 96440	718 bp downstream
Tssr96441	transcription start site region 96441	517 bp downstream
Tssr96442	transcription start site region 96442	306 bp downstream
Tssr96443	transcription start site region 96443	917 bp upstream
Tssr99941	transcription start site region 99941	1695 bp upstream
Tssr99942	transcription start site region 99942	1630 bp upstream
Tssr99943	transcription start site region 99943	1568 bp upstream
Tssr99944	transcription start site region 99944	1545 bp upstream
Tssr99945	transcription start site region 99945	1455 bp upstream
Tssr99946	transcription start site region 99946	1431 bp upstream
Tssr99947	transcription start site region 99947	1288 bp upstream
Tssr99948	transcription start site region 99948	1258 bp upstream
Tssr99949	transcription start site region 99949	653 bp upstream
Tssr99950	transcription start site region 99950	482 bp upstream
Tssr99951	transcription start site region 99951	459 bp upstream
Tssr99952	transcription start site region 99952	455 bp upstream
Tssr99953	transcription start site region 99953	418 bp upstream
Tssr99954	transcription start site region 99954	74 bp upstream
Tssr99955	transcription start site region 99955	41 bp upstream
Tssr99956	transcription start site region 99956	693 bp downstream
Tssr99957	transcription start site region 99957	760 bp downstream