rs31487044 SNP Detail

Summary

• ID
  rs31487044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115651366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA TCCCTTAAAA TGCATTCAAA
  Y
  GCCCTTCAGT CAAGCCCTCT ACTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss48057367	NES11881894	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	C	T		C	T	C		T
ss321916360	CHEV_6_115624423	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31487044					SNP	T	T	C	T	T	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057367	NES11881894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115651366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	1275 bp proximal
D830050J10Rik	RIKEN cDNA D830050J10 gene	1563 bp upstream
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr379970	regulatory region 379970	1188 bp downstream
Rr399847	regulatory region 399847	1961 bp upstream
Rr637015	regulatory region 637015	37 bp proximal
Rr637016	regulatory region 637016	749 bp proximal
Rr637017	regulatory region 637017	1549 bp proximal
Rr637018	regulatory region 637018	1601 bp proximal
Tssr58320	transcription start site region 58320	1539 bp upstream
Tssr58321	transcription start site region 58321	1578 bp upstream
Tssr62522	transcription start site region 62522	1466 bp downstream