rs31487047 SNP Detail

Summary

• ID
  rs31487047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115651716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTTC CAAGTCTCCA
  GTCTCGGCTA GGTCAAATGT TGCTGCTGGA TTTTAAACAG CTTACTTAGC CCTTGAAGTG
  ATAAGAGTAA AACCAAACCA AAAGAACCTC AGTGGTTTTC AGTGGTTCAC AGCACCAAAG
  ATTTGGACAC TGCTCCTGAT GTCTTCACTT CCAAATAGCC ACTTCAGCAT AAGCCTTAAT
  Y
  GAAGGAGCTA TTTTAGAAGA AGAATGTTCA CAGGGCTGCA GACGTCTTAA CAAAGCTGCA
  ACCTGGGGAC TCTGTCCAAA GAAAAGAGTC TACTACATAA ATAGGGTTAA TTAAAAATAC
  TTTCATGCTA CACTTCTTCA GGTGCTTTCT ATAATCTGCC AATTTCTGTC TGTTTGGGGA
  ATGTGTTAAC CTTAGAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48057371	NES11881896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31487047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057371	NES11881896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115651716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	925 bp proximal
D830050J10Rik	RIKEN cDNA D830050J10 gene	1213 bp upstream
Raf1	v-raf-leukemia viral oncogene 1	Intron
Rr379970	regulatory region 379970	1538 bp downstream
Rr399847	regulatory region 399847	1611 bp upstream
Rr637015	regulatory region 637015	159 bp distal
Rr637016	regulatory region 637016	399 bp proximal
Rr637017	regulatory region 637017	1199 bp proximal
Rr637018	regulatory region 637018	1251 bp proximal
Rr637019	regulatory region 637019	1870 bp proximal
Tssr58320	transcription start site region 58320	1189 bp upstream
Tssr58321	transcription start site region 58321	1228 bp upstream
Tssr58322	transcription start site region 58322	1959 bp upstream
Tssr62522	transcription start site region 62522	1116 bp downstream
Tssr62523	transcription start site region 62523	1717 bp downstream
Tssr62524	transcription start site region 62524	1846 bp downstream
Tssr62525	transcription start site region 62525	1868 bp downstream