rs31487555 SNP Detail

Summary

• ID
  rs31487555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115653736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACCTGCG GCGCCGCCGG
  GCTCACTGCC TCTGCGCGAG CTCCTGGGCT CGGCAGTCCG CTTAAAACTC GGCTCGGGGA
  TCTATCGCTC GAGCCTGGAA TGTGGCCCCG CCTCCGGGGG CGTGGCCTCG CGGTCCTGCG
  GCCGCCATTT CGGGGTTGAC TCCGTGGTAG CAGAGTGACT GTTTCTGGTT GGAGGCCAGT
  R
  GTATTGGGCT GCAGCCGCGG TCCGGCCACC CGCGAGGCCC TCAGCGGGCC AGACGCGCCT
  GGTGACACAC GGCACAGGGC TCCAGCTCTG GTGCTTCCTC TCCGAAGTTG ACATCCGTGG
  AGAATGGCGG CCTAGGGGTT TTGTGGGAAA GCCCTCATGC TATGTGAAAC CTCAGGTTCC
  TCATTTGTAG ATGGAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48057379	NES11881900	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31487555					SNP	G	G	A	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057379	NES11881900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115653736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	within coordinates
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	140 bp upstream
Rr399847	regulatory region 399847	109 bp downstream
Rr637016	regulatory region 637016	822 bp distal
Rr637017	regulatory region 637017	770 bp distal
Rr637018	regulatory region 637018	151 bp distal
Rr637019	regulatory region 637019	within coordinates
Tssr58320	transcription start site region 58320	819 bp downstream
Tssr58321	transcription start site region 58321	771 bp downstream
Tssr58322	transcription start site region 58322	21 bp downstream
Tssr62522	transcription start site region 62522	888 bp upstream
Tssr62523	transcription start site region 62523	197 bp upstream
Tssr62524	transcription start site region 62524	157 bp upstream
Tssr62525	transcription start site region 62525	133 bp upstream