rs31487557 SNP Detail

Summary

• ID
  rs31487557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115653952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGTCCGG CCACCCGCGA
  GGCCCTCAGC GGGCCAGACG CGCCTGGTGA CACACGGCAC AGGGCTCCAG CTCTGGTGCT
  TCCTCTCCGA AGTTGACATC CGTGGAGAAT GGCGGCCTAG GGGTTTTGTG GGAAAGCCCT
  CATGCTATGT GAAACCTCAG GTTCCTCATT TGTAGATGGA GTGTTCGCTG TAGTACACCA
  R
  GTTGACCAAA AACTAAAAGT ATGGTGTTGC ACACCTGTAA TGCCAGCGCT TGGAAAGTGA
  GGGCAAGAGG GTCGGGAGTT CACGGTCATA TGAGCTGCAT GAGACCCTGT CTCAAAAAAG
  AAAAAAAAAT TAAAATTGAT GCGACAATAT GGCCCACCGT AAACTGAAGC CTGTTGTGCG
  TCTTCGTACA GCCCCCGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48057381	NES11881902	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31487557					SNP	A	A	G	A	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057381	NES11881902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115653952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	within coordinates
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	356 bp upstream
Rr399847	regulatory region 399847	325 bp downstream
Rr637016	regulatory region 637016	1038 bp distal
Rr637017	regulatory region 637017	986 bp distal
Rr637018	regulatory region 637018	367 bp distal
Rr637019	regulatory region 637019	within coordinates
Tssr58320	transcription start site region 58320	1035 bp downstream
Tssr58321	transcription start site region 58321	987 bp downstream
Tssr58322	transcription start site region 58322	237 bp downstream
Tssr62522	transcription start site region 62522	1104 bp upstream
Tssr62523	transcription start site region 62523	413 bp upstream
Tssr62524	transcription start site region 62524	373 bp upstream
Tssr62525	transcription start site region 62525	349 bp upstream