rs31487595 SNP Detail

Summary

• ID
  rs31487595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAAGAG CTGGGTTTAC
  CGGGTTTATT GGTGTGTGCC ACTCCTGCTA TCAACAGACA CTTTTGAAGG TCTCTTTATA
  CCTGATCTTG TTCTTAGTTC TTTCTGTAGG ATAAGCAAAA ACACAAACTG AAGCAAGTGC
  CTAGATGTCT GTAAAGCTTC CTAGCTCTTG ATCACCGTAA ACAAAGATTC TGTTTAAATA
  R
  CACTTGTGTC CCAAACTACT CTTCGAATCA GTTCTTGCAT AAAGTCAAAG ACTCTCCTAC
  ATTAAACAAG CCATAGGTTG GAATATGATT TTTCCAATAA GGAATATGAA GAGAAACTCA
  GACTTTTATT TTATTTCGGT TTTTCAAGAC AGGATTTCGA TGTGTCGCCC TGGCTGTCCT
  GGAACTTACT CTGTAGACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47057689	NES11267130	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G		G	A	A
ss323535813	CHEV_10_128182920	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31487595					SNP	A	A	A	G	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057689	NES11267130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1641 bp distal
Cpgi2419	CpG island 2419	1838 bp proximal
Dgka	diacylglycerol kinase, alpha	1009 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	105 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1467 bp proximal
Rr385481	regulatory region 385481	1461 bp upstream
Rr402364	regulatory region 402364	915 bp downstream
Tssr96440	transcription start site region 96440	1042 bp downstream
Tssr96441	transcription start site region 96441	841 bp downstream
Tssr96442	transcription start site region 96442	630 bp downstream
Tssr96443	transcription start site region 96443	593 bp upstream
Tssr96444	transcription start site region 96444	1924 bp upstream
Tssr96445	transcription start site region 96445	1986 bp upstream
Tssr99942	transcription start site region 99942	1954 bp upstream
Tssr99943	transcription start site region 99943	1892 bp upstream
Tssr99944	transcription start site region 99944	1869 bp upstream
Tssr99945	transcription start site region 99945	1779 bp upstream
Tssr99946	transcription start site region 99946	1755 bp upstream
Tssr99947	transcription start site region 99947	1612 bp upstream
Tssr99948	transcription start site region 99948	1582 bp upstream
Tssr99949	transcription start site region 99949	977 bp upstream
Tssr99950	transcription start site region 99950	806 bp upstream
Tssr99951	transcription start site region 99951	783 bp upstream
Tssr99952	transcription start site region 99952	779 bp upstream
Tssr99953	transcription start site region 99953	742 bp upstream
Tssr99954	transcription start site region 99954	398 bp upstream
Tssr99955	transcription start site region 99955	365 bp upstream
Tssr99956	transcription start site region 99956	369 bp downstream
Tssr99957	transcription start site region 99957	436 bp downstream
Tssr99958	transcription start site region 99958	1764 bp downstream
Tssr99959	transcription start site region 99959	1856 bp downstream