rs31487598 SNP Detail

Summary

• ID
  rs31487598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTGGTG TGTGCCACTC
  CTGCTATCAA CAGACACTTT TGAAGGTCTC TTTATACCTG ATCTTGTTCT TAGTTCTTTC
  TGTAGGATAA GCAAAAACAC AAACTGAAGC AAGTGCCTAG ATGTCTGTAA AGCTTCCTAG
  CTCTTGATCA CCGTAAACAA AGATTCTGTT TAAATAACAC TTGTGTCCCA AACTACTCTT
  Y
  GAATCAGTTC TTGCATAAAG TCAAAGACTC TCCTACATTA AACAAGCCAT AGGTTGGAAT
  ATGATTTTTC CAATAAGGAA TATGAAGAGA AACTCAGACT TTTATTTTAT TTCGGTTTTT
  CAAGACAGGA TTTCGATGTG TCGCCCTGGC TGTCCTGGAA CTTACTCTGT AGACCAGGTG
  GGCCTCGAAC TCGAACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47057692	NES11267131	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	C		C
ss323535814	CHEV_10_128182944	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31487598					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057692	NES11267131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1665 bp distal
Cpgi2419	CpG island 2419	1814 bp proximal
Dgka	diacylglycerol kinase, alpha	1033 bp upstream
Gm31504	predicted gene, 31504	6 bp downstream
Gm66065	predicted gene, 66065	81 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1443 bp proximal
Rr385481	regulatory region 385481	1437 bp upstream
Rr402364	regulatory region 402364	939 bp downstream
Tssr96440	transcription start site region 96440	1066 bp downstream
Tssr96441	transcription start site region 96441	865 bp downstream
Tssr96442	transcription start site region 96442	654 bp downstream
Tssr96443	transcription start site region 96443	569 bp upstream
Tssr96444	transcription start site region 96444	1900 bp upstream
Tssr96445	transcription start site region 96445	1962 bp upstream
Tssr99942	transcription start site region 99942	1978 bp upstream
Tssr99943	transcription start site region 99943	1916 bp upstream
Tssr99944	transcription start site region 99944	1893 bp upstream
Tssr99945	transcription start site region 99945	1803 bp upstream
Tssr99946	transcription start site region 99946	1779 bp upstream
Tssr99947	transcription start site region 99947	1636 bp upstream
Tssr99948	transcription start site region 99948	1606 bp upstream
Tssr99949	transcription start site region 99949	1001 bp upstream
Tssr99950	transcription start site region 99950	830 bp upstream
Tssr99951	transcription start site region 99951	807 bp upstream
Tssr99952	transcription start site region 99952	803 bp upstream
Tssr99953	transcription start site region 99953	766 bp upstream
Tssr99954	transcription start site region 99954	422 bp upstream
Tssr99955	transcription start site region 99955	389 bp upstream
Tssr99956	transcription start site region 99956	345 bp downstream
Tssr99957	transcription start site region 99957	412 bp downstream
Tssr99958	transcription start site region 99958	1740 bp downstream
Tssr99959	transcription start site region 99959	1832 bp downstream