rs31487600 SNP Detail

Summary

• ID
  rs31487600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTATCAA CAGACACTTT
  TGAAGGTCTC TTTATACCTG ATCTTGTTCT TAGTTCTTTC TGTAGGATAA GCAAAAACAC
  AAACTGAAGC AAGTGCCTAG ATGTCTGTAA AGCTTCCTAG CTCTTGATCA CCGTAAACAA
  AGATTCTGTT TAAATAACAC TTGTGTCCCA AACTACTCTT CGAATCAGTT CTTGCATAAA
  R
  TCAAAGACTC TCCTACATTA AACAAGCCAT AGGTTGGAAT ATGATTTTTC CAATAAGGAA
  TATGAAGAGA AACTCAGACT TTTATTTTAT TTCGGTTTTT CAAGACAGGA TTTCGATGTG
  TCGCCCTGGC TGTCCTGGAA CTTACTCTGT AGACCAGGTG GGCCTCGAAC TCGAACTCAG
  AAATCCGCCT GCCTCTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47057695	NES11267132	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31487600					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057695	NES11267132	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1685 bp distal
Cpgi2419	CpG island 2419	1794 bp proximal
Dgka	diacylglycerol kinase, alpha	1053 bp upstream
Gm31504	predicted gene, 31504	26 bp downstream
Gm66065	predicted gene, 66065	61 bp downstream
Pym1	PYM homolog 1, exon junction complex associated factor	1981 bp upstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1423 bp proximal
Rr385481	regulatory region 385481	1417 bp upstream
Rr402364	regulatory region 402364	959 bp downstream
Tssr96440	transcription start site region 96440	1086 bp downstream
Tssr96441	transcription start site region 96441	885 bp downstream
Tssr96442	transcription start site region 96442	674 bp downstream
Tssr96443	transcription start site region 96443	549 bp upstream
Tssr96444	transcription start site region 96444	1880 bp upstream
Tssr96445	transcription start site region 96445	1942 bp upstream
Tssr99942	transcription start site region 99942	1998 bp upstream
Tssr99943	transcription start site region 99943	1936 bp upstream
Tssr99944	transcription start site region 99944	1913 bp upstream
Tssr99945	transcription start site region 99945	1823 bp upstream
Tssr99946	transcription start site region 99946	1799 bp upstream
Tssr99947	transcription start site region 99947	1656 bp upstream
Tssr99948	transcription start site region 99948	1626 bp upstream
Tssr99949	transcription start site region 99949	1021 bp upstream
Tssr99950	transcription start site region 99950	850 bp upstream
Tssr99951	transcription start site region 99951	827 bp upstream
Tssr99952	transcription start site region 99952	823 bp upstream
Tssr99953	transcription start site region 99953	786 bp upstream
Tssr99954	transcription start site region 99954	442 bp upstream
Tssr99955	transcription start site region 99955	409 bp upstream
Tssr99956	transcription start site region 99956	325 bp downstream
Tssr99957	transcription start site region 99957	392 bp downstream
Tssr99958	transcription start site region 99958	1720 bp downstream
Tssr99959	transcription start site region 99959	1812 bp downstream