rs31487603 SNP Detail

Summary

• ID
  rs31487603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAGGA TTTCGATGTG
  TCGCCCTGGC TGTCCTGGAA CTTACTCTGT AGACCAGGTG GGCCTCGAAC TCGAACTCAG
  AAATCCGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GGTGTGCCAC TGCCTGGCAG
  GAGCTCAGAG TTACTGTAAC ATCTTTGTAC CTTATTTTGG ATCTGTGTTT CGCCATATTC
  Y
  CAGGTCAGTT GTTGGTGGGG GTGGTGGAAG AAAAGCAAAG AACCATCTAC GGAAGAGGTG
  TTTGATGTCT ATAGTTCCAG GTGCTCATCT CTTTAATCAA CCACATCATA CAAGTCAGAA
  AGAAAGAAAC CACAGTGAAC AAAGGGAAAG GAAAAAACAA GCCTGTTTTC CCAGCCTCTT
  CTTCCTCTGG GTGGGGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057698	NES11267094	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	C		C
ss323535817	CHEV_10_128183265	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31487603					SNP	T	T	T	T	T	T	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057698	NES11267094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1986 bp distal
Cpgi2419	CpG island 2419	1493 bp proximal
Dgka	diacylglycerol kinase, alpha	1354 bp upstream
Gm31504	predicted gene, 31504	327 bp downstream
Gm66065	predicted gene, 66065	within coordinates
Pym1	PYM homolog 1, exon junction complex associated factor	1680 bp upstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1122 bp proximal
Rr385481	regulatory region 385481	1116 bp upstream
Rr402364	regulatory region 402364	1260 bp downstream
Tssr96440	transcription start site region 96440	1387 bp downstream
Tssr96441	transcription start site region 96441	1186 bp downstream
Tssr96442	transcription start site region 96442	975 bp downstream
Tssr96443	transcription start site region 96443	248 bp upstream
Tssr96444	transcription start site region 96444	1579 bp upstream
Tssr96445	transcription start site region 96445	1641 bp upstream
Tssr99947	transcription start site region 99947	1957 bp upstream
Tssr99948	transcription start site region 99948	1927 bp upstream
Tssr99949	transcription start site region 99949	1322 bp upstream
Tssr99950	transcription start site region 99950	1151 bp upstream
Tssr99951	transcription start site region 99951	1128 bp upstream
Tssr99952	transcription start site region 99952	1124 bp upstream
Tssr99953	transcription start site region 99953	1087 bp upstream
Tssr99954	transcription start site region 99954	743 bp upstream
Tssr99955	transcription start site region 99955	710 bp upstream
Tssr99956	transcription start site region 99956	24 bp downstream
Tssr99957	transcription start site region 99957	91 bp downstream
Tssr99958	transcription start site region 99958	1419 bp downstream
Tssr99959	transcription start site region 99959	1511 bp downstream