rs31488142 SNP Detail

Summary

• ID
  rs31488142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123601985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTACCTA CAGATACTTG
  CTCCAGGCCA TAGGTATTTT ATTGAGCTAG AAGGCTGACT GCATCCATCA AAGTTGTAAT
  CTTCAGCTGT ACAGCTGTAA GCAAGATTCT GTCACTTAGG AAACAGAAAG CTAATCCCTG
  AAGCTCAATC CCAAGAGTAT TGTTCAATGG CATAGGCAAC CCAAAGTCCC TATACTGAAG
  Y
  CAAGTAGCAA TAGAACCTCC AGATCCAACA CTTCATCAGA TTGTGACCTG TATGCTTGTA
  AACCTGCAAA ATTTACAGCC TATAGTGAAC TTGGGGTACA CCTCCAGATG TTCTTAAGCC
  TTAATGATTG TAATGACACC CTTAGGGTCG GGCAACTTAG AGAAGGCATG GGTGTAGTGA
  CAGTAAAAGT GGCTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45540494	mCV23882604	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss51028504	NES13904398	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	T	T	T		C	T	T	C		C
ss135773743	ENSMUSSNP2825909	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320923141	CHEV_3_123511254	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31488142					SNP	C	C	C	T	C	C	C	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028504	NES13904398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123601985 () rs orientation: forward

Symbol	Name	Function Class
Rr584567	regulatory region 584567	1427 bp proximal