rs31488216 SNP Detail

Summary

• ID
  rs31488216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128657319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTCAAG AAATGGGAGT
  CCTTCCCTTC TAGGAGCGGT TTTAGTTTTT AAACTTCTGC AAGCTCTAAT GCCTACTTTT
  GTTTTTTGTT TTGTTTGTTT TAACCCGCTC TTGCCTGTCC CACAATTCCC CAAATCAATT
  ACAGAGTCCG CCCATGCTCC TCCCAGAGTC CCAGTTTCGC ATGTCACTTT CTTCACGGGA
  Y
  CTCTCGAATC TAAGGTTGTC GTTTCGCCGC CCTTCCCAAT ACTCCCACCG ATTTCTCTCT
  GTAACTTTTT AAAGTTTCAC GGGGCCCATA CCTGCCAGCT TCAGGAGCCC GTCCGGCTTG
  GGGCACAGCG CTGGCTCTTA CACCTGTGGT CTCCAGGAAG TGGCCGACTT TCGCCCTGTC
  TGCGCTCTCC CTATTGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057926	NES11264952	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T	C		T
ss323536210	CHEV_10_128258506	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31488216					SNP	T	T	T	T	T	T	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057926	NES11264952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128657319 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	4 bp proximal
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	71 bp upstream
Rr441331	regulatory region 441331	within coordinates
Rr441332	regulatory region 441332	131 bp proximal
Rr441333	regulatory region 441333	458 bp proximal
Rr441334	regulatory region 441334	475 bp proximal
Rr441335	regulatory region 441335	793 bp proximal
Rr441336	regulatory region 441336	1848 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	314 bp upstream
Tssr96457	transcription start site region 96457	1776 bp downstream
Tssr96458	transcription start site region 96458	276 bp upstream
Tssr96459	transcription start site region 96459	295 bp upstream
Tssr96460	transcription start site region 96460	334 bp upstream
Tssr96461	transcription start site region 96461	437 bp upstream
Tssr99967	transcription start site region 99967	126 bp downstream