rs31488222 SNP Detail

Summary

• ID
  rs31488222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128657905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGGTG GGAGCAAGAG
  AAACAGCGAT TGGTTGGATG AGCCTAAGCG CCTGAGGTGG GGGCCAGCGG TGGGGGTCCG
  GTGGACTGAG GCGCATCAAG ATGGCGGCCG AGACGGTGGA GCTCCACAAG CTGAAGGTAC
  CGTTACGCGG GGAAGGCTGA GGTGGGGTTT CCTGGAGCCT AAATTCTACG CGGGGCCCTG
  Y
  GCGGCCTTAT TCCACGTGTT TTCCTGTCAG GCGCCCGCTT ACACTTCTTT CCTGGCTCCC
  GTTGTTGTTT TGTGCCTCCT TTCTTAGGCC TACCTTGAAC TTCGTTTCTC CTCAGTAATT
  TATCGCTATC GTTACCTGGT GTTTACCTGC TGTTACCTGT TCTTCTCATT GTTTTTATTA
  CCTGCCACCC TTCCCTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47057932	NES11264956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31488222					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057932	NES11264956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128657905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	within coordinates
Ormdl2	ORM1-like 2 (S. cerevisiae)	407 bp upstream
Rr402366	regulatory region 402366	214 bp downstream
Rr441331	regulatory region 441331	456 bp distal
Rr441332	regulatory region 441332	129 bp distal
Rr441333	regulatory region 441333	within coordinates
Rr441334	regulatory region 441334	90 bp distal
Rr441335	regulatory region 441335	207 bp proximal
Rr441336	regulatory region 441336	1262 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	299 bp downstream
Tssr96459	transcription start site region 96459	263 bp downstream
Tssr96460	transcription start site region 96460	236 bp downstream
Tssr96461	transcription start site region 96461	123 bp downstream
Tssr99967	transcription start site region 99967	404 bp upstream