rs31488466 SNP Detail

Summary

• ID
  rs31488466
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCTTCCTG ACAGAAGAGG AAACAAGTTT
  AACAGGATTT AGCCCCAGAG GAACTAAATT GCTGATGGAG GAGGGGAGGG ACCGGACCGG
  GCTTTGGCGC TCCTTCCAAG AACAAGGCAC AACCTAACAA AGGGAGTGGC CTCACTGTCC
  S
  GGTAGATTTA AGGGTGGAAC TGCTCGCGGT AGCCAAAGCT AATCCGAAGT GTGGGGCGCG
  GCTAATTAGA ATACTGACTG GGTCCGCCCC AAAAGCCTTC ACCCCGTGCC CTCTGACCCG
  AGAGGATCCA GTACTGAGCA GCAGGCCAAG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057701	NES11266973	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	C	C		C
ss323535822	CHEV_10_128184815	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31488466					SNP	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057701	NES11266973	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm31504	predicted gene, 31504	1877 bp downstream
Gm66065	predicted gene, 66065	1410 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	130 bp upstream
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1285 bp downstream
Tssr96444	transcription start site region 96444	29 bp upstream
Tssr96445	transcription start site region 96445	91 bp upstream
Tssr96446	transcription start site region 96446	742 bp upstream
Tssr96447	transcription start site region 96447	992 bp upstream
Tssr99956	transcription start site region 99956	1507 bp upstream
Tssr99957	transcription start site region 99957	1447 bp upstream
Tssr99958	transcription start site region 99958	114 bp upstream
Tssr99959	transcription start site region 99959	15 bp upstream