rs31488469 SNP Detail

Summary

• ID
  rs31488469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAGAGG AGCTTGAGCC
  AGCACCTTCC TGACAGAAGA GGAAACAAGT TTAACAGGAT TTAGCCCCAG AGGAACTAAA
  TTGCTGATGG AGGAGGGGAG GGACCGGACC GGGCTTTGGC GCTCCTTCCA AGAACAAGGC
  ACAACCTAAC AAAGGGAGTG GCCTCACTGT CCCGGTAGAT TTAAGGGTGG AACTGCTCGC
  S
  GTAGCCAAAG CTAATCCGAA GTGTGGGGCG CGGCTAATTA GAATACTGAC TGGGTCCGCC
  CCAAAAGCCT TCACCCCGTG CCCTCTGACC CGAGAGGATC CAGTACTGAG CAGCAGGCCA
  AGAAGTTACC TCGCCGGCCG CTGAATCCCC AGGGCTGCCC GCCCCAGTTC AGTCATGGAA
  ACCGCCAGCA CCCCCGAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47057704	NES11266974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C		C	G	G	C		G
ss323535823	CHEV_10_128184843	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31488469					SNP	G	G	G	G	G	G	G	G	C	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057704	NES11266974	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm31504	predicted gene, 31504	1905 bp downstream
Gm66065	predicted gene, 66065	1438 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	102 bp upstream
Rr224483	regulatory region 224483	1455 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1313 bp downstream
Tssr96444	transcription start site region 96444	1 bp upstream
Tssr96445	transcription start site region 96445	63 bp upstream
Tssr96446	transcription start site region 96446	714 bp upstream
Tssr96447	transcription start site region 96447	964 bp upstream
Tssr99956	transcription start site region 99956	1535 bp upstream
Tssr99957	transcription start site region 99957	1475 bp upstream
Tssr99958	transcription start site region 99958	142 bp upstream
Tssr99959	transcription start site region 99959	43 bp upstream