rs31488472 SNP Detail

Summary

• ID
  rs31488472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCTGA CCCGAGAGGA
  TCCAGTACTG AGCAGCAGGC CAAGAAGTTA CCTCGCCGGC CGCTGAATCC CCAGGGCTGC
  CCGCCCCAGT TCAGTCATGG AAACCGCCAG CACCCCCGAG GCCACGGGGA CAGGTGACCG
  ACTCGCAGTG CGCCGATCTT TGCGCACCCC TTCGTAGGTC TCTGATCAGT TAACCTGGGC
  R
  GCCGAGAGTG GTCGGCGTGC CGAGTAGACC TGCCCACTTT TAAGTGTTAG CCCGGGTTTT
  CGTGTATCCC TGGGGCTTCT TTGCCCATGC CAACACGCGC CCTAGGGTTT GGTGCAGGCG
  AGGGGCCTTG CATATTCCTT TCCTCTTTTA CCAGCTTTCC TGCTGGGTCC CGGTGGGCCT
  TGAGCCTGCG AGGACTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47057707	NES11266975	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31488472					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057707	NES11266975	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm66065	predicted gene, 66065	1717 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	within coordinates
Rr224483	regulatory region 224483	1734 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1592 bp downstream
Tssr96444	transcription start site region 96444	267 bp downstream
Tssr96445	transcription start site region 96445	171 bp downstream
Tssr96446	transcription start site region 96446	435 bp upstream
Tssr96447	transcription start site region 96447	685 bp upstream
Tssr99956	transcription start site region 99956	1814 bp upstream
Tssr99957	transcription start site region 99957	1754 bp upstream
Tssr99958	transcription start site region 99958	421 bp upstream
Tssr99959	transcription start site region 99959	322 bp upstream