rs31488571 SNP Detail

Summary

• ID
  rs31488571
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCGCGCC GGAAGGTTTC
  TCGAACCGGG AGAACGGGAA GCCTGGGCAG TGCGAGCAGA CCCGCCCGGC CCTCGGCTTT
  TCCGGGAGGA AGGCATATCT CACTCCCGCG TGCAGCCCGC TATGAGACAG AATAGAGGGC
  CTTTAGTGAT GGAGTATGGA GATGACAGTT GTCGTCATGG AGAATGTTAG TTAGAAAGCT
  K
  TGATCATTAC AGGCTGGGAA GGGTGCGGTT AGGGCAACAC CGTGCAGGAG TCAGTAGGAA
  CGAATTCATT GGAGACAATA CTCGCATTTG AAGGACCTAG AGGGGTTCGT GAACCTCAGC
  TCGCTCACCC ACTATCTCAT TTTACTTAAA ATAATCACTA CTGAATTGAA AGAACTAGTT
  CATCATAAGG CTCAAGTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45539747	mCV24054165	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss135766585	ENSMUSSNP5448354	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T			T
ss320920401	CHEV_3_123211911	CHEVERUD	SCREENING_POP	f	SNP				G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31488571					SNP	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	35 bp distal
Gm9369	predicted pseudogene 9369	949 bp downstream
Rr397991	regulatory region 397991	1959 bp downstream
Rr584524	regulatory region 584524	1939 bp distal
Rr584525	regulatory region 584525	119 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	317 bp proximal
Rr584528	regulatory region 584528	1903 bp proximal
Snhg8	small nucleolar RNA host gene 8	657 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	927 bp upstream
Tssr31551	transcription start site region 31551	425 bp downstream
Tssr31552	transcription start site region 31552	378 bp downstream
Tssr35502	transcription start site region 35502	652 bp upstream
Tssr35503	transcription start site region 35503	64 bp upstream