rs31488681 SNP Detail

Summary

• ID
  rs31488681
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132615932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CTGGCTAGGC GGCTTAGGAC
  K
  CGGGCCTGGC CCAGGTTGGG TGCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46037776	mCV22843070	ABI	CRAMUS_MOUSE	f	SNP		G	G					T		G
ss47272966	NES11562669	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G		G	G	G	T		G	G	G	G		T
ss145938476	ENSMUSSNP7201155	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss322453043	CHEV_7_140205886	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31488681					SNP	G	G	G	G	G	T	G	T	G	G	G	T	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272966	NES11562669	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132615932 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	1035 bp proximal
Tssr75241	transcription start site region 75241	1110 bp downstream
Tssr75242	transcription start site region 75242	1266 bp downstream
Tssr75243	transcription start site region 75243	1298 bp downstream