rs3148877 SNP Detail

Summary

• ID
  rs3148877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93887568 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGCCCACCCG CCACTTTTGA
  AATGATCCCT TTTCTCTTAA CGGCAGCGTC CGAGCTTATC CAGTTTCTTG TCCTCCTGCC
  CGTATCATCG TTTCCCAGAG CAAAGGGAGG CAAGTTGGGG AAAACGATAT AGGAGTCTCT
  CACTCGAATC TGCTCACAAA CTCTCGGAGC CTCAGCGTTG GCCTGCGGTG CGCGGGCCTT
  S
  CTGTGCATTC AGCAGCTCAG AGAGGATAGA GCAGCGAGTC CTTGTCCACC AGCAGAAAAA
  GAGAGAAATG GAGGAGGGGG GAGCAAAAGC AGAGGCGAGA GAGAAGTAAG GAGAAGGGAA
  AAAATTATAA TGGAGAGAGA GCAGGAGGAG GAGGAGAAGA AAGAAGAAGA AGAAGAAGAA
  GAAGGAGAAG GAGAAGGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39455909	mCV25392281	ABI	CRAMUS_MOUSE	r	SNP	C	G	G	G
ss148576893	ENSMUSSNP682922	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3148877					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93887568 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	462 bp distal
Cpgi8494	CpG island 8494	within coordinates
Gm31175	predicted gene, 31175	1565 bp upstream
Gm60844	predicted gene, 60844	1607 bp upstream
Rr520042	regulatory region 520042	1768 bp distal
Rr520043	regulatory region 520043	1618 bp distal
Rr520044	regulatory region 520044	1117 bp distal
Rr520045	regulatory region 520045	51 bp proximal
Rr520046	regulatory region 520046	975 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1775 bp downstream
Tssr139540	transcription start site region 139540	1459 bp downstream