rs3148878 SNP Detail

Summary

• ID
  rs3148878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93886951 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCGCG GCCTCCCCAG ACGCGGCCAC
  R
  GTAGCCAGGA GGCCGCGCGG GCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39459312	mCV25392290	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3148878					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93886951 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Cpgi8494	CpG island 8494	608 bp proximal
Gm31175	predicted gene, 31175	948 bp upstream
Gm60844	predicted gene, 60844	990 bp upstream
Rr520041	regulatory region 520041	1736 bp distal
Rr520042	regulatory region 520042	1151 bp distal
Rr520043	regulatory region 520043	1001 bp distal
Rr520044	regulatory region 520044	500 bp distal
Rr520045	regulatory region 520045	668 bp proximal
Rr520046	regulatory region 520046	1592 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1158 bp downstream
Tssr139540	transcription start site region 139540	842 bp downstream