rs3148881 SNP Detail

Summary

• ID
  rs3148881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93885208 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGGCAATCGA CTTTGGGCCA
  AAGCTTCAGG TCGACAATAA TAGAGCCTTG GTAACCGGGA ACGCTGATGC GACCCTCAGA
  AGTGGAGCAG AGGTAGCTGG CGAAGGGAGA TTCAGTCACT GAGTGCAAGC ATTCTCCCAC
  TGCGCCACAC TAGGTTAAAT AATCTTGTGT CTTCCCTGCT GCTGAGGCCC GGATAGATGC
  S
  GGCACTACAG TCCCCTCGGG CGCTCAGGCG GTCGCGGTCG CCCGAACCCA TCCACACTCC
  TCTTTGGAGC CTAAATCTTC CGACGCGGGT CAGATGCCAT TTCCCAGGCG TCTTGGATCC
  CAGACAGAGA CGCAGAGAGG TCTCAGCGCA GTTCTTTTTG TCGTCGTGGA CCCCGTGGCT
  CGCTTGGTGG CTGTAAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39473484	mCV25392473	ABI	CRAMUS_MOUSE	r	SNP	C	C	G	G	G
ss148576869	ENSMUSSNP1512099	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3148881					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93885208 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	483 bp upstream
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	1630 bp distal
Rr520040	regulatory region 520040	494 bp distal
Rr520041	regulatory region 520041	within coordinates
Rr520042	regulatory region 520042	92 bp proximal
Rr520043	regulatory region 520043	593 bp proximal
Rr520044	regulatory region 520044	743 bp proximal
Sim2	single-minded family bHLH transcription factor 2	755 bp upstream
Tssr139539	transcription start site region 139539	568 bp upstream
Tssr139540	transcription start site region 139540	877 bp upstream