rs31488845 SNP Detail

Summary

• ID
  rs31488845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128658489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGCATT TTTGCATGTT
  TTGCTGAATA TGTCCCAAAC ATAACCCAGA AAGTGCTTCC GTTCTCTTTT AACAAGGTGG
  GGTTAAGACC CCGCACTCGA ATTTTTAAAA TCAAGGAGAG GAGAGGCCTT AAGATAGGTT
  TCTCGGTGGA AACCTGGGGT AGAGGCTTCT CCAAAAGGTT GTAAGATGGC AAACACATCA
  R
  TCCTAAAAGT TTTTCGAGTT TTCTCAGGAG GTTCTCAATG ACCTGCCCTC CCTCCCCTGA
  CTATCCTACC TCTAGAGAGA GAACGTGTAG GGTAGATAGC TGTAATATGA GAGGTGTATG
  AAGTATGTTT GAAAACCTTA GGATTTTGTT TGTCCTTTTA ACCTTTGGGA AGGATCCCAG
  CTCTCTTGAT GTCACCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47057935	NES11264957	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		G	A	A		G
ss323536215	CHEV_10_128259676	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31488845					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057935	NES11264957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128658489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2421	CpG island 2421			453 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)			991 bp upstream
Rr402366	regulatory region 402366			798 bp downstream
Rr441331	regulatory region 441331			1040 bp distal
Rr441332	regulatory region 441332			713 bp distal
Rr441333	regulatory region 441333			within coordinates
Rr441334	regulatory region 441334			674 bp distal
Rr441335	regulatory region 441335			356 bp distal
Rr441336	regulatory region 441336			678 bp proximal
Sarnp	SAP domain containing ribonucleoprotein			Intron
				Noncoding-Transcript-Variant
Tssr96458	transcription start site region 96458			883 bp downstream
Tssr96459	transcription start site region 96459			847 bp downstream
Tssr96460	transcription start site region 96460			820 bp downstream
Tssr96461	transcription start site region 96461			707 bp downstream
Tssr99967	transcription start site region 99967			988 bp upstream