rs31489147 SNP Detail

Summary

• ID
  rs31489147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154975822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCACAATA AAATTCAGTT CCTTTCATAC ACAATTTCCA
  GCTGCTCATA GCTGTTTCAG CTGTAATTTC TGGTCATTCT TGGCAGAAAT GGAAGCGATG
  R
  CAATATATGA CAACTAGCAC GATATATTTG AGATATTATG TTGGAGTTAG CCCCTTTCCC
  ATTAGCGTTA TACTCAGCAT TTAACTACAA ACAAAAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45038376	mCV25211064	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss49516897	NES12843068	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	G	A	A	A	G
ss145775305	ENSMUSSNP2877655	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31489147					SNP	A	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516897	NES12843068	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154975822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	220 bp distal
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	within coordinates
Ier5	immediate early response 5	440 bp upstream
Rr28750	regulatory region 28750	21 bp distal
Rr396412	regulatory region 396412	202 bp downstream
Tssr9525	transcription start site region 9525	1845 bp downstream
Tssr9526	transcription start site region 9526	1817 bp downstream
Tssr9527	transcription start site region 9527	1780 bp downstream
Tssr14336	transcription start site region 14336	1330 bp upstream
Tssr14337	transcription start site region 14337	595 bp upstream
Tssr14338	transcription start site region 14338	532 bp upstream
Tssr14339	transcription start site region 14339	443 bp upstream