rs31489332 SNP Detail

Summary

• ID
  rs31489332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128661905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAAATTT CTGAAAAATC
  TGTGGCAGTA TAGTCATTCT GACTTAGTTG GAAAGACTGG ATTGTGGTTG AGAATGTCTT
  GAACTATAAC AACCAGATTT ATAATCACAC ATGATAAAAG GAATTCTATA GTGGAGAGAA
  CCAGAAAGAT CTGTAATAGT GTCTTAGTGT AGTGAACACT ATTATAAAGT ATTTATGTTA
  Y
  TGAAACATGA CATATGTAAA AATTGCTAGT AGTTTGGAAA GTTAGTGAAA CTGGCTGTAA
  GAGGAATGCA GAGGAGAGAC TTTTGTTATT GTTTGTAATC TTTGTGTGTC CTTTGTACAA
  ATGCATGTAA TCTGTGGAAG TCAGGACAGC CTCCAGTGTC CATTCTTGTC TGCTATCTTG
  TTTGAGACAG AATCTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47057953	NES11264814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		C	T	T		T
ss323536233	CHEV_10_128263092	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31489332					SNP	T	T	T	T	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47057953	NES11264814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128661905 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Sarnp	SAP domain containing ribonucleoprotein			Intron
				Noncoding-Transcript-Variant