rs31489952 SNP Detail

Summary

• ID
  rs31489952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67619399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTCCTA ATCTCATTCT
  ACTTTTCTTC TCTCTTCCAG ATAGGACATT CCTGCCATAA AGCTTTACCT GGATAGCCTA
  CATCCCATGT GGAACCGTGA AGACCCCTAT TGAGGCATCT TTGTGGAAAG CAAAAGTTGT
  CAAGACAATT CTCCACTATC ACATCAACCT TGTTAGCTCT AGTCTTAACC AGAGTCAGGC
  Y
  GTGTTCCCTT TATCTTATAA TCTCATCTCC TAGGGCAACT TATGCATGTG AAACATGAAG
  AAATAAAAAT GAGTCCCCTA CAGAAAAAAA CAGACTCATC TACCTGTAGG GGAAAGCCAC
  TAGCCAGGTG CTGGGGCTTG CCCTTCAGTC TTGAGGCCTT AGCCAACAAC TATTTCCAGC
  ACTTTCCATT TCTCTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46572956	NES10442776	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31489952					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572956	NES10442776	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67619399 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	1842 bp upstream
Rr366834	regulatory region 366834	689 bp upstream
Rr612680	regulatory region 612680	1660 bp proximal
Tssr46586	transcription start site region 46586	1830 bp upstream