rs31489979 SNP Detail

Summary

• ID
  rs31489979
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153615736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC CTCCGTGAAC TCTCCACCCC
  M
  TACCAAACCT CTCCTGTCAC TTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45038870	mCV24630558	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss145749126	ENSMUSSNP3477631	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31489979					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153615736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi870	CpG island 870	173 bp proximal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	363 bp upstream
Rr420741	regulatory region 420741	1778 bp distal
Rr420742	regulatory region 420742	within coordinates
Rr420743	regulatory region 420743	220 bp proximal
Tssr9477	transcription start site region 9477	354 bp upstream
Tssr9478	transcription start site region 9478	545 bp upstream