rs31490276 SNP Detail

Summary

• ID
  rs31490276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48952762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAGCTA GTGAGGGTTG
  GGACTTAGCT GTTAGCAGAG TTAGCAATGA GCCTAGGAGT GAAGAAATGA CACTGGTGGG
  ATAGAGAAGA GTGGGCGGTA GCGGAGTTGC TACATTTCCA AAGTCAAAAG GCCTTCTGAG
  AAGGTGACCT CAGAGATGAG AACACAGGTG AATCTAGAGG AACAATGTTC CAAGGAGGGA
  Y
  TGTCAGATGT GAGGCGGGAA GGACTTTAAT ATATTAACAG CAGAACAAAG GCTACTACTG
  GTAGAGCCTG GAAGGTCAGG GGTGGAAGGT AGAAGAGGAT GGGGTAGATA AGCCAAAGAA
  AACTGTGTCT TAAAAACATA TTTATTTATT TCTAACAATG AAAGAAATCA AATCCTGAAG
  GGTAGCGGTT ATAAGAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46038587	mCV23859143	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31490276					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48952762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1170 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr161370	regulatory region 161370	1762 bp distal
Rr167850	regulatory region 167850	638 bp proximal
Tssr66792	transcription start site region 66792	807 bp upstream
Tssr66793	transcription start site region 66793	1066 bp upstream
Tssr66794	transcription start site region 66794	1237 bp upstream
Tssr66795	transcription start site region 66795	1267 bp upstream