rs31490334 SNP Detail

Summary

• ID
  rs31490334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTGCTG AGGTGAAAGA
  TTGGAAGACC CGGAAAGATC AGCTAGATTT CGGAAACCAG AAACACCCTC GGGGAGACCT
  GGGGCTCCCG GCGCGCGACG ATTTCCTCGC ACTAGCTGGG AGAGCGTTGA TCCCATGGCC
  AGGATTCCGA GGTGCGATTT TCTCCGGCCC CCCGGAATCT ACTATCTTAT TACTTCCTTG
  Y
  TCGCTGGACT GTTCTTACCA CCGGCTATCG CCTTCAATCT GGATGTGATG GGTGCCATAC
  GCAAGGAGGG AGAACCCGGC AGCCTATTCG GCTTTTCGGT GGCCCTGCAC CGACAATTAC
  AGCCCCGACC CCAGAGCTGG TGAGTCACCG TACCCGCCCA GAGTCCCCAG GCTCAAGCTT
  TGGGCTACCT TTCTCCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47058424	NES11260423	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490334					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058424	NES11260423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	within coordinates
Gm67752	predicted gene, 67752	1750 bp downstream
Itga7	integrin alpha 7	within coordinates
Rr441374	regulatory region 441374	225 bp distal
Rr441375	regulatory region 441375	1263 bp proximal
Rr441376	regulatory region 441376	1533 bp proximal
Tssr96480	transcription start site region 96480	292 bp downstream
Tssr96481	transcription start site region 96481	274 bp downstream
Tssr96482	transcription start site region 96482	227 bp downstream