rs31490340 SNP Detail

Summary

• ID
  rs31490340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128770899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGCA GCAGCAGCAG
  CAGCAGCAGC AGCAGCAGCA GGAGGATACA GTAAAGATAC CACGCTGCTT CTGTTCCTCC
  TCAGGAAATT TCTAACTCCA GAAATCTCAG CAGTAGGGAG AGACAAGGAA GCCCGAGGCT
  GAGGAATAAT TGACATTTTT TTCAGGACCC CTGGTAGCTA GACACATTTG CAGTGTTTCC
  R
  AATCCTTGGT TCTTACTACA TGTGACAGGA GGTGAGACCA GGAAGAAAGC TTCCCACCCC
  CGCCCGCCAA AGGGCTTTCT CACCCATGGC CAATGCACAA GCCACATTTA AGTGTCCATT
  ACTGGGATCG ATGCTGTCCT CGGGGACTGT CTTTTCCTTG GTCTGGGGGC AGGAGACAGA
  GATGAGAGTT TATTTCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47058430	NES11260425	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G		G	A	A	G		A
ss323536822	CHEV_10_128372086	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31490340					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47058430	NES11260425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128770899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	766 bp distal
Gm67752	predicted gene, 67752	775 bp downstream
Itga7	integrin alpha 7	Intron
Rr441374	regulatory region 441374	1200 bp distal
Rr441375	regulatory region 441375	288 bp proximal
Rr441376	regulatory region 441376	558 bp proximal
Tssr96480	transcription start site region 96480	1267 bp downstream
Tssr96481	transcription start site region 96481	1249 bp downstream
Tssr96482	transcription start site region 96482	1202 bp downstream