rs31490604 SNP Detail

Summary

• ID
  rs31490604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155090629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATTGTAGC CCCTGGGTCC CAGAGAATCC AGGCTCTGAA
  TATGGACTCT CCAAGCCCTT TCCTAAAGGT TTGTGGCCAT TTGGCCGATC TGAGCTCCGT
  R
  CACACTTCCT CTCCTGTTTG AAGTGTGGCT GTCCCTTTTG GTGCTTCTTG GCCAAGATGA
  GCCTTTCCAG TGAGGCCCTG TCTCTAAATA ACCAAGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45039285	mCV24606599	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss49516495	NES12836278	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A	A	A	A	A	G
ss145777562	ENSMUSSNP3697097	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490604					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516495	NES12836278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155090629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420974	regulatory region 420974			837 bp distal
Rr420975	regulatory region 420975			137 bp proximal
Rr420976	regulatory region 420976			668 bp proximal