rs31490643 SNP Detail

Summary

• ID
  rs31490643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115707293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGACAC CCCTCTGCAT
  GCTTCCTCAC TTAGGGACAG TCTGTGCAGT AAGAAATGCA CCAGCTTTCC AGCCGAGAAG
  CCTGAGGCTA CAGACGGCTG GGTTGTGGCT TGCCTAGCGT GCTGCAGGTC TCGGATTCCA
  TTCTCAGCAC AGAAAAGGGC TATCTGGGGG GGTCACAGGA CACAGGCAGA ACTTGAACCC
  R
  AGCCTCCTGA CTCAGGGACT TTCCATAGAC GACAGATCTT TTTCCAAGGA GAAAGCCCCA
  ATCGGGAGAG GGTTTTGGAT GGGGAAACGT GCGGCACCAT TACCTGGCAG CCGGAACTTC
  TGAAGGAGGG GGATGAAGCC CTGAAGCACG CTGTGGATCC GGTACACTGC TCAGAGAACA
  AGGGGGAAAT GTTGGTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48057733	NES11880526	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490643					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48057733	NES11880526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115707293 () rs orientation: forward

Symbol	Name	Function Class
Rr132360	regulatory region 132360	1908 bp proximal
Tmem40	transmembrane protein 40	within coordinates
Tssr58323	transcription start site region 58323	1630 bp upstream
Tssr62527	transcription start site region 62527	745 bp downstream
Tssr62528	transcription start site region 62528	766 bp downstream