rs31490744 SNP Detail

Summary

• ID
  rs31490744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67619694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC CTGCCTCTTA GCCTCCCTCA
  Y
  GATGTAGATC AGAGATCATG ATGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46572958	NES10442778	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	T	C	T	T	T		T	T	C
ss148602206	ENSMUSSNP163994	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321565295	CHEV_5_67853590	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs31490744					SNP	T	T	T	T	C	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572958	NES10442778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67619694 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	1547 bp upstream
Rr366834	regulatory region 366834	394 bp upstream
Rr612680	regulatory region 612680	1365 bp proximal
Tssr46586	transcription start site region 46586	1535 bp upstream