rs31490746 SNP Detail

Summary

• ID
  rs31490746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67619777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTTCC ATTTCTCTGT
  CACATCCAGG CTGTAGCCAC CACTTAATAG CCTTGTCTTT TGTTCACCCT TCTTTCTCTG
  CAATCCACAA ATCTCTCCTG CCTCTTAGCC TCCCTCACGA TGTAGATCAG AGATCATGAT
  GAGCAAATGT GTTTTAGACT GCTTGGATTA TTTGTTTTTC TTTCAGTCGC ATGTCCATGA
  M
  AAAATTCTGA TCTGGATTTG CCTACCTCCC TTCTTTAGCA AGTGGGCCTC ACTGCCTTAC
  ACTGTACACT GGAGAGCAGC CCCTCCCTAG TCCTCAGTCA TGCCCAGGTT GTTACTCTTC
  CAATCACCCG CAGCCACCAG GCTATAATTC ACTTGCTCCA TGAAGCCTCC CACCTCCCAC
  CACTTCTGCC AACTTGGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46572960	NES10442780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490746					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572960	NES10442780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67619777 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	1464 bp upstream
Rr366834	regulatory region 366834	311 bp upstream
Rr612680	regulatory region 612680	1282 bp proximal
Tssr46586	transcription start site region 46586	1452 bp upstream