rs31490752 SNP Detail

Summary

• ID
  rs31490752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67623117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAGGAA TGCATGCTTT
  AAACCCATAA CAGTAATCTG TTTTGCAGAT TATAGCCCGA CATCAGATGC GATTGAAGTG
  GCTTTAGCAA ATGTCTTCTC ATAGAGCCTG CTCAGCCTAG GGTAGTTAAT CAGATGTTTC
  ATGGGATAAA GGGCTGCCAC GTGCCTTGCC TGCTGTCCTG AATCCTTCTC AATACCTGCA
  Y
  GACCAAGGAT TTATTCTTAA TGGCTGAAAG GCAGGCTGAT GGCCCTCTCT GGGAATTAGC
  ATCCTTGTCC AAAGTTGCAT TGATTTAGAG AGACAGCCCA CACTCAGTGT TCGATAAGGG
  GACAAAAAAG CCCAGTTCCT CTGCCTGAAC TGGGGATACC TCTGAAGGAG CATCCCTGCC
  TCAGACCCTC TGAGGGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46572967	NES10442579	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31490752					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572967	NES10442579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67623117 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	within coordinates
Rr366834	regulatory region 366834	1239 bp downstream
Rr612680	regulatory region 612680	1856 bp distal
Rr612681	regulatory region 612681	970 bp proximal
Rr612682	regulatory region 612682	1094 bp proximal
Tssr46586	transcription start site region 46586	1837 bp downstream