rs3149085 SNP Detail

Summary

• ID
  rs3149085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118270703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GACACCCACC ACAGCAAAGA
  R
  ATAGAAGAGG AGCAATAAGG ACTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37652938	NES09020741	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G		A		G		G
ss45355486	mCV23160542	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		G
ss147300458	ENSMUSSNP5231252	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						G
ss320469561	CHEV_2_118265958	CHEVERUD	SCREENING_POP	f	SNP											A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs3149085					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652938	NES09020741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118270703 () rs orientation: forward

Symbol	Name	Function Class
D2Mit276	DNA segment, Chr 2, Massachusetts Institute of Technology 276	1845 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	within coordinates
Rr45942	regulatory region 45942	1298 bp proximal